Journal: Journal of Bacteriology

Article Title: MS2 Lysis of Escherichia coli Depends on Host Chaperone DnaJ

doi: 10.1128/JB.00058-17

Figure Lengend Snippet: Strains, phages, and plasmids used in this study

Article Snippet: In this construct, both the L syn and lacZ α genes were codon optimized for E. coli expression (Codon Optimization Tool; Integrated DNA Technologies, Coralville, IA) and the synthetic DNA with flanking EcoRI and HindIII sites at the 5′ and 3′ ends was cloned into pUC57 at GenScript.

Techniques: Plasmid Preparation, Clone Assay, Control, Acetylene Reduction Assay

Journal: Cell Reports Methods

Article Title: Enzymatic assay for UDP-GlcNAc and its application in the parallel assessment of substrate availability and protein O-GlcNAcylation

doi: 10.1016/j.crmeth.2023.100518

Figure Lengend Snippet: Effect of hexosamine biosynthetic pathway hyperactivity on cellular UDP-GlcNAc and protein O-GlcNAcylation in AML12 cells (A–C) UDP-GlcNAc content (A), protein O-GlcNAcylation (B), and OGA-to-OGT expression ratio (C) in parental cells and cells with stable overexpression of wild-type (WT) or E328K mutant GFPT1. (D) Representative western blots and total protein staining as a loading control. One-way ANOVA followed by the selected pairwise comparisons (t test). Data points represent replicate cell culture flasks. Error bars represent mean and ±SD.

Article Snippet: Mouse Gfpt1 PCR cloning: Gfpt1-STP-XhoI 5′-ATCTCGAGTTAC TCTACTGTTACAGATTTGGC-3′ , Metabion , N/A.

Techniques: Expressing, Over Expression, Mutagenesis, Western Blot, Staining, Control, Cell Culture

Journal: Cell Reports Methods

Article Title: Enzymatic assay for UDP-GlcNAc and its application in the parallel assessment of substrate availability and protein O-GlcNAcylation

doi: 10.1016/j.crmeth.2023.100518

Figure Lengend Snippet: Effect of disrupted hexosamine biosynthetic pathway on cellular UDP-GlcNAc and protein O-GlcNAcylation in a pancreatic adenocarcinoma cell line (TU8988T) (A–C) UDP-GlcNAc content (A), protein O-GlcNAcylation (B), and OGA-to-OGT expression ratio (C) in parental and GFPT1 knockout cells with and without 10 mM GlcNAc in media. Note the logarithmic y axis in (A). The indicated time points refer to duration since replacement of the culture media (start of the GlcNAc starvation). (D) Representative western blots and total protein staining. (E) Growth curves of the GFPT1 knockout cells. ∗Bonferroni-corrected p < 0.0001 (1-way ANOVA followed by the selected pairwise comparisons). The data points represent replicate cell culture flasks. Error bars represent ±SD.

Article Snippet: Mouse Gfpt1 PCR cloning: Gfpt1-STP-XhoI 5′-ATCTCGAGTTAC TCTACTGTTACAGATTTGGC-3′ , Metabion , N/A.

Techniques: Expressing, Knock-Out, Western Blot, Staining, Cell Culture

Journal: Cell Reports Methods

Article Title: Enzymatic assay for UDP-GlcNAc and its application in the parallel assessment of substrate availability and protein O-GlcNAcylation

doi: 10.1016/j.crmeth.2023.100518

Figure Lengend Snippet:

Article Snippet: Mouse Gfpt1 PCR cloning: Gfpt1-STP-XhoI 5′-ATCTCGAGTTAC TCTACTGTTACAGATTTGGC-3′ , Metabion , N/A.

Techniques: Virus, Recombinant, Protease Inhibitor, Over Expression, Mutagenesis, Knock-Out, PCR Cloning, Amplification, Clone Assay, Plasmid Preparation, Sequencing, Software